Browsing by Author "Pekol S."

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Ecotoxicological assessment of metalworking fluids using the Allium cepa test procedure
(2014-01-01) Pekol S.; Pekol, S
Metalworking fluids (MWFs), which have a long history of use in industry and are in constant and ever-increasing use in parallel with advancements in mechanisation, are emulsions prepared with water. MWFs prepared as a 1/20 (MWF: water) mixture in practice, contain a large amount of water within their structure, and may become an aquatic toxic mixture in an ecosystem. In this study, half maximal effective concentration (EC50) values for MWFs were determined using the Allium cepa test, an accepted ecotoxicological biomonitor, and test solutions were prepared (1/250, 1/500 and 1/1000). Depending on the MWF ratio at each concentration, a decrease in the mitotic index (MI), irregularities in the phase distribution and aberrations in the chromosomes were observed. When the amount of MWF in the water increased, chromosomal abnormalities such as stickiness were observed to occur; whereas abnormalities such as c-mitosis, fragments, bridges, vagrants and micronucleus increased as the amount of the MWF decreased. Over a second 24-h period, it was observed that values, in particular MI, showed a tendency to return to normal. © 2013 © 2013 Taylor & Francis.
Ecotoxicological assessment of metalworking fluids using the Allium cepa test procedure
(2014-01-01) Pekol S.
Metalworking fluids (MWFs), which have a long history of use in industry and are in constant and ever-increasing use in parallel with advancements in mechanisation, are emulsions prepared with water. MWFs prepared as a 1/20 (MWF: water) mixture in practice, contain a large amount of water within their structure, and may become an aquatic toxic mixture in an ecosystem. In this study, half maximal effective concentration (EC50) values for MWFs were determined using the Allium cepa test, an accepted ecotoxicological biomonitor, and test solutions were prepared (1/250, 1/500 and 1/1000). Depending on the MWF ratio at each concentration, a decrease in the mitotic index (MI), irregularities in the phase distribution and aberrations in the chromosomes were observed. When the amount of MWF in the water increased, chromosomal abnormalities such as stickiness were observed to occur; whereas abnormalities such as c-mitosis, fragments, bridges, vagrants and micronucleus increased as the amount of the MWF decreased. Over a second 24-h period, it was observed that values, in particular MI, showed a tendency to return to normal. © 2013 © 2013 Taylor & Francis.
Evaluation of genotoxic and cytologic effects of environmental stress in wheat species with different ploidy levels
(2016-01-01) Pekol S.; Baloğlu M.C.; Çelik Altunoğlu Y.
Drought and salinity induce biochemical, physiological, morphological, and genetic responses in plants. To understand the damage to different wheat species caused by these stresses, we investigated root-shoot growth, cell division, chromosomal aberrations, and nucleolus organizer regions (AgNORs) in root tip cells. Inhibition of root and shoot growth were observed in diploid, tetraploid, and hexaploid wheat genotypes after salt and drought stresses. Both stresses had adverse effects on dividing cells in root tips of all wheat species and caused a decrease in mitotic index values. Salt and drought lead to the induction of chromosome aberrations and repression of interphase AgNOR parameters. Both treatments produced different mitotic abnormalities including chromosomal stickiness, c-mitosis, and micronuclei formation, which indicated their action on the mitotic spindle. Reduction in AgNOR parameters showed that salt and drought may decrease the level of ribosomal biogenesis and reduce the length of the cell cycle. Because of the toxicity of Na ions, salinity inhibited all parameters at a higher degree than drought in all Triticum species. Cytotoxic effects of salinity and drought were mainly observed in meristematic cells in all wheat species. This comprehensive analysis may provide valuable information for understanding the effects of salt and drought stresses on cytogenetics of wheat species.
Identification and expression analysis of LEA gene family members in cucumber genome
(2016-11-01) Celik Altunoglu Y.; Baloglu P.; Yer E.N.; Pekol S.; Baloglu M.C.
LEA (late embryogenesis abundant) proteins are firstly discovered in seeds and then identified in vegetative tissues of different plant species. They are mainly regulated under abiotic stress conditions. Although genome wide studies of different gene family members have been performed in cucumber, there is no such a study for LEA genes. We have identified 79 LEA genes in the cucumber genome. Based on phylogenetic analysis, CsLEA genes could be classified into seven groups in which structural motifs are relatively conserved. Tandem duplications play an important role in cucumber genome for LEA gene expansion. Orthologous and chromosomal relationships of CsLEA genes were observed based on comparative mapping analysis with other species. The in silico micro-RNA (miRNA) target analyses indicated that 37 CsLEA genes were targeted by different miRNAs, especially mir854 and mir414 are the most abundant identified ones. Public available RNA-seq data were analyzed for expression analysis of CsLEA genes in different tissues of cucumber. According to genome-wide expression analysis, nine CsLEA genes showed higher expression profiles in all tissues. The expression profiles of ten CsLEA genes in the root and leaf tissues of drought-stressed cucumber were examined using qRT-PCR. Among them, CsLEA-54 induced after stress application in leaf and root tissues and might provide adaptation to drought stress for cucumber. CsLEA-09, CsLEA-32 and CsLEA-57 genes responded to drought after 3 h later and might be considered as early response genes to water limitation. This research could help us to improve understanding of contribution of CsLEAs to drought tolerance in cucumber.
Identification, molecular characterization and expression analysis of RPL24 genes in three Cucurbitaceae family members: Cucumber, melon and watermelon
(2015-01-01) Baloglu M.C.; Ulu F.; Altunoglu Y.C.; Pekol S.; Alagoz G.; Ese O.
Ribosomal proteins are crucial for the proper growth and development of any organism, including plants. The ribosomal protein L24 (RPL24) is found in the large subunit of the ribosome and is responsible for the stabilization of the peptidyl transferase activity. Although RPL24 gene has been individually identified in different organisms, little is known about the genome-wide survey and expression patterns of R24 genes in Cucurbitaceae family members. We identified seven Cucurbitaceae RPL24 genes from cucumber, melon and watermelon. They were phylogenetically clustered into seven major groups. Gene structure and motif composition are relatively conserved in each group. Three-dimensional homology modelling of RPL24 proteins was performed with higher confidence level. CmRPL24-01 was isolated from melon and characterized at a molecular level. The regulation of ribosomal proteins in melon under drought stress conditions was also studied. The expression of CmRPL24-01 gene increased in melon leaf tissue at 3 h upon polyethylene glycol treatment and showed a gradual induction after 12 h. Our study provided a very useful reference for identification and functional analysis of RPL24 protein members in different plants. In addition, this research indicated a potential usage of ribosomal proteins in response to drought stress.
The prediction of potential energy and matter production from biomass pyrolysis with artificial neural network
(2017-11-01) Aydinli B.; Caglar A.; Pekol S.; Karaci A.
The potentiality determination of renewable energy resources is very important. The biomass is one of the alternative energy and material resources. There is great effort in their conversion to precious material but yet there is no generalized rule. Therefore, the prediction of the energy and material potentials of these resources has gained great importance. Also, the solution to environmental problems in real time can be found easily by predicting models. Here, the basic products of pyrolysis process, char, tar and gas were also predicted by artificial neural network modelling. The half of data obtained from real experimental process along with some content and proximate analysis were fed into artificial neural network modelling. After the training of the model with this data, the remaining half of the data were introduced into this artificial neural network model. And the model predicted the pyrolysis process products (char, tar and gaseous material). The predicted data and the real experimental data were compared. In addition, another aim of this study is to reduce the labour in identification and characterization of the pyrolysis products. For this purpose, a theoretical framework has also been sketched. The necessity of a generalized rule for generation of energy and matter production from biomass pyrolysis has been punctuated. As a result, the ANN modelling is found to be applicable in the prediction of pyrolysis process. Also, the extensive reduction in labour and saving in economy is possible.
The pyrolysis process verification of hydrogen rich gas (H-rG) production by artificial neural network (ANN)
(2016-03-02) Karaci A.; Caglar A.; Aydinli B.; Pekol S.
The main aim of this study is subject of thermochemical conversion process data into computational modelling. Especially, prediction of hydrogen gas from the pyrolysis of waste materials regarded as environmentally pollutants were accomplished by Artificial Neural Network (ANN) in context of sustainability. The data obtained from pyrolysis of biomass wastes; cotton cocoon shell (cotton-S), tea waste (tea-W) and olive husk (olive-H) were categorized and hydrogen rich gas (H-rG) portion was introduced to the NFTOOL of MATLAB program for ANN. The variables in the pyrolysis process were catalyst type, amount, temperature and biomass diversity. The H-rG production was rendered by catalysts; ZnCl2, NaCO3 and K2CO3. The combination of following condition; ZnCl2-10%, Olive-H and 973 K yield the best ANN models. This helped us save comprehensive amount of labour and time during experimentations, which also result in sharpness data in energy and environmental issues and were very ambiguous. The results were discussed by using new concepts related with energy resources, hydrogen gas, modelling and sustainability. The presented perspective here can be a useful tool for researchers and users as well as planners.
The toxic and environmental evaluation of pyrolytic liquids by Allium cepa test
(2012-02-01) Pekol S.; Caglar A.; Aydinli B.
In this study, liquid products obtained from the pyrolysis of hazelnut shell (HS), with and without ultra-high molecular weight polyethylene (UHMWPE), were subjected to the Allium cepa test system. Pyrolysis in conjunction with the A. cepa test is a promising technology not only from the perspective of energy savings and a source of precious material, but in terms of the removal of hazardous material from the environment in safe manner. Dosages of pyrolytic liquids dissolved in water were determined according to lethal dose (LD 50), with three different solution concentrations. The preparates were dyed with acetocarmine. The mitotic index decreased and chromosomal aberration, especially stickiness and c-mitosis, increased with dosage and time. The addition of UHMWPE to HS in the pyrolysis process resulted in less harmful chemical agents, as observed by the relatively higher mitotic index and lower levels of chromosomal aberration. © 2012 Copyright Taylor and Francis Group, LLC.
X-ray fluorescence spectrometry characteristics of oily waste water from steel processing and an evaluation of its impact on the environment
(2018-06-01) Pekol S.
Metal-cutting fluids, one of the most consumed materials in the metallurgy industry, turn into oily wastewater after being used in the metalworking processes. The amount of cutting fluids used can reach up to millions of tons. And these invaluable fluids are difficult to distil and expensive, and impossible to store. Even after it is disposed and recaptured, the end product has no commercial value. In this study, the effect of this mixture was examined on the ecosystem using the Allium cepa test system in which onion root tips were treated with three different concentrations of waste-cutting fluid, based on a 24- and 48-h cell cycle. The oily wastewater exhibited a mechanism which triggered the chromosomal and nuclear abnormalities in the onion root-tip meristem and reduced the mitotic index. Common abnormalities observed in the experimental groups based on the water concentration were chromosome stickiness, c-mitosis, and micronuclei formation. In the experimental group with the lowest water concentration, budding nuclei were observed at a different level than all of the other experimental groups. The x-ray fluorescence analysis showed that the concentrations of elements, such as silicon, calcium, iron, and zinc, were higher in the oily wastewater than those in the unused cutting oil.
X-ray fluorescence spectrometry characteristics of oily waste water from steel processing and an evaluation of its impact on the environment.
(2018-06-01T00:00:00Z) Pekol, Sefa; Pekol, S
Metal-cutting fluids, one of the most consumed materials in the metallurgy industry, turn into oily wastewater after being used in the metalworking processes. The amount of cutting fluids used can reach up to millions of tons. And these invaluable fluids are difficult to distil and expensive, and impossible to store. Even after it is disposed and recaptured, the end product has no commercial value. In this study, the effect of this mixture was examined on the ecosystem using the Allium cepa test system in which onion root tips were treated with three different concentrations of waste-cutting fluid, based on a 24- and 48-h cell cycle. The oily wastewater exhibited a mechanism which triggered the chromosomal and nuclear abnormalities in the onion root-tip meristem and reduced the mitotic index. Common abnormalities observed in the experimental groups based on the water concentration were chromosome stickiness, c-mitosis, and micronuclei formation. In the experimental group with the lowest water concentration, budding nuclei were observed at a different level than all of the other experimental groups. The x-ray fluorescence analysis showed that the concentrations of elements, such as silicon, calcium, iron, and zinc, were higher in the oily wastewater than those in the unused cutting oil.