Browsing by Author "Bayarslan, AU"
Now showing 1 - 6 of 6
- Results Per Page
- Sort Options
Web of Science Comparative bioinformatics analysis and abiotic stress responses of expansin proteins in Cucurbitaceae members: watermelon and melon(2023.01.01) Incili, CY; Arslan, B; Celik, ENY; Ulu, F; Horuz, E; Baloglu, MC; Cagliyan, E; Burcu, G; Bayarslan, AU; Altunoglu, YCWeb of Science Comparative genomic analysis of expansin superfamily gene members in zucchini and cucumber and their expression profiles under different abiotic stresses(2021.01.01) Arslan, B; Incili, CY; Ulu, F; Horuz, E; Bayarslan, AU; Ocal, M; Kalyoncuoglu, E; Baloglu, MC; Altunoglu, YCPublication Identification and Characterization of LEA Genes in Ash Tree (Fraxinus excelsior) Genome(2019.01.01) Bayarslan, AU; Aslı UĞURLU BAYARSLANAim of study: LEA proteins have a critical role in the abiotic stress response of plants. Ash belongs to the olive family and its genome sequence is complete. The LEA genes has not been extensively analyzed, although there are annotations in the ash genome. Therefore, it was aimed to perform genome-wide analysis of LEA genes in ash genome using bioinformatic tools in this study. Materials and methods: Ash and LEA protein sequences were obtained from the Ash Tree Genome and LEAP database respectively. Homologous LEA peptides in ash were found using CLC Genomic Workbench 11. Properties of ash LEA proteins were determined with Expasy PROTPARAM. MEGA7 was used to construct the phylogenetic tree. Functional analysis of ash LEA proteins was carried out via Blast2GO. miRNAs targeting transcripts of ash LEA proteins were detected with psRNATarget. The threedimensional structures of ash LEA proteins were predicted using PHYRE2. Main result: 118 LEA genes (FexLEA) were identified in ash genome. FexLEA were divided into 5 distinct clusters according to phylogenetic analysis. The major molecular function of FexLEA was found as the binding activity. miR838 was the most common miRNA targeting FexLEA transcripts. Highlights: This study will provide the basis for further functional analysis of LEA proteins in ash.Web of Science Identification and Characterization of LEA Genes in Ash Tree (Fraxinus excelsior) Genome(2019.01.01) Bayarslan, AUWeb of Science New perspectives into the chemical characterization of Sida acuta Burm. f. extracts with respect to its anti-cancer, antioxidant and enzyme inhibitory effects(2021.01.01) Uysal, S; Gevrenova, R; Sinan, KI; Bayarslan, AU; Altunoglu, YC; Zheleva-Dimitrova, D; Ak, G; Baloglu, MC; Etienne, OK; Lobine, D; Mahomoodally, MF; Zengin, GWeb of Science Surface chemistry dependent toxicity of inorganic nanostructure glycoconjugates on bacterial cells and cancer cell lines(2023.01.01) Sancak, S; Yazgan, I; Bayarslan, AU; Ayna, A; Evecen, S; Tasdelen, Z; Gumus, A; Sonmez, HA; Demir, MA; Demir, S; Bakar, F; Dilek-Tepe, H; Kasemets, K; Otsus, M; Ceter, T